rs52459620 SNP Detail

Summary

• ID
  rs52459620
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:85804613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GGAGGCAGAG GCAGGCGGAT TTCTGAGTTC GAGGCCAGCC
  TGGTCTACAA AGTGAGGTCC AGGACAGCCA GGGCTATACA AAGAAACCCT GTCTCGAAAA
  A
  CCAAAAAAAA AAAAAAAAAA AAAAAAAGAA TTCAGTTAAT AATAGTGAAC AACAACAACA
  ACAACTAAAC TTAGGAACAA GCCAAGAAAG TGAAAAACAG T                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss137928098	ENSMUSSNP6408346	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52459620					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85804613 () rs orientation: forward

Symbol	Name	Function Class
Flvcr2	feline leukemia virus subgroup C cellular receptor 2	Intron
Gm40478	predicted gene, 40478	within coordinates
Rr469999	regulatory region 469999	996 bp distal
Rr470000	regulatory region 470000	458 bp distal
Tssr114432	transcription start site region 114432	1672 bp upstream
Tssr117101	transcription start site region 117101	1613 bp downstream