rs52457561 SNP Detail

Summary

• ID
  rs52457561
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:92267438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGA CCTAACCTCT AAGAGGATTG
  B
  GAAGGAATAA ATAAATAAAT AAATA                                      
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52681582	NES15521841	PERLEGEN	MM_PANEL2	f	SNP	C			G	C	G	C	C	C	C	C
ss144931594	ENSMUSSNP1533942	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs52457561					SNP	C	C	T	G	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52681582	NES15521841	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92267438 () rs orientation: forward

Symbol	Name	Function Class
Rasgrf2	RAS protein-specific guanine nucleotide-releasing factor 2	Intron
Rr483653	regulatory region 483653	716 bp proximal
Tssr4138	transcription start site region 4138	617 bp downstream
Tssr123423	transcription start site region 123423	677 bp downstream
Tssr123424	transcription start site region 123424	868 bp downstream
Tssr123425	transcription start site region 123425	888 bp downstream
Tssr123426	transcription start site region 123426	919 bp downstream
Tssr123427	transcription start site region 123427	947 bp downstream