rs52454001 SNP Detail

Summary

• ID
  rs52454001
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149929924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAC ATACACAGAG GCGCGCGCGC
  R
  CGCACACACA CACAAACACC ACTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148041509	ENSMUSSNP1572507	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321426959	CHEV_4_149219576	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52454001					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149929924 () rs orientation: forward

Symbol	Name	Function Class
Gm54270	predicted gene, 54270	148 bp downstream
Rr605077	regulatory region 605077	1355 bp distal
Rr605078	regulatory region 605078	within coordinates
Rr605079	regulatory region 605079	1270 bp proximal