rs52453407 SNP Detail

Summary

• ID
  rs52453407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:34687978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAA AGGCCTTGTC CAGATCCCGC
  Y
  CGGCAGCAGA GCCTGGAATG CTAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321782452	CHEV_6_34661043	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52453407					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34687978 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cald1	caldesmon 1			Intron
				Noncoding-Transcript-Variant
Gm38787	predicted gene, 38787			1252 bp downstream
Rr628363	regulatory region 628363			1399 bp distal
Rr628364	regulatory region 628364			405 bp distal
Tssr55522	transcription start site region 55522			1597 bp downstream
Tssr55523	transcription start site region 55523			1546 bp downstream
Tssr55524	transcription start site region 55524			1501 bp downstream
Tssr55525	transcription start site region 55525			1457 bp downstream
Tssr55526	transcription start site region 55526			1408 bp downstream