rs52452859 SNP Detail

Summary

• ID
  rs52452859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127153225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATGGTGCC CAGGGCCTTG TGCATACCAG GCAGCCAGAG
  TGCATTTTCT AGAATTCTGT ATGAATGGAG TCTTAAATAT ATATGTATAT TTTTAAAGAT
  R
  TATTTTATTT TTATTTATGT GTGTTTTGTA TATTATGTGT TGTTTTTGCA AGCATATGTT
  CCTGAGTAGA GGTGCCTGCA GAGGGCACCA GATCCCCTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147525589	ENSMUSSNP311303	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs52452859					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127153225 () rs orientation: forward

Symbol	Name	Function Class
Gm54150	predicted gene, 54150	within coordinates
Rr397284	regulatory region 397284	271 bp downstream
Rr564492	regulatory region 564492	127 bp distal
Rr564493	regulatory region 564493	71 bp proximal