rs52449428 SNP Detail

Summary

• ID
  rs52449428
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130289178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGAATTA AGGAACTTGC
  CAGCTCAATT TGTTTGGCGT ATACTTTTTT TCCAGTGAGC TATTTTTAGA GCAGTTTCAT
  GATGATCATT GCTATTTAAT AAGATCGTTG TCCCGTTATT ATAATAGAAA TTTAATATAG
  AACTAAGAAA AATCTGTTTT CTTATTCTAT GTTAAGAATA AGCAAAAAAA TAAAACATAT
  R
  TATATGTATG TATATGTATA TATGTATATG TGTATACACA CACACACACA CCTTGTCTAG
  AGCCTAAAAA GAGAAGTGGC AAGGAGTAAA TGACATATTT ATTAATGTTC CCTGTGTTTA
  TTTAAGTGTC ATGGATTGTA CCAGGTAGTC ACTGGCTTTC CTACTGTAAG TTGAGCCCTC
  TGTATGGAGC CATTCATCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135895105	ENSMUSSNP3237851	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52449428					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130289178 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Rr585170	regulatory region 585170	343 bp distal
Rr585171	regulatory region 585171	596 bp distal
Rr585172	regulatory region 585172	392 bp distal