rs52448642 SNP Detail

Summary

• ID
  rs52448642
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135623936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAATATTG GCTTGAATAT
  GAGTATTTTG GCGTCCTGGT CTACTCTACT GGGCCATCCA TAGCAGGTGG GGGTTTGAAA
  AGGACTCCAG AAGACTAAAG CCTTGGGACT CACCTGGGCA ATCTGAAGCC TGTGGGGTTT
  TGTTTGTTTG TTTGTTGTTT GGTTTTGGTT TTTCAAGACA GGGTCTCTCT GTGTAGTCCT
  G
  GCTGTCCTGG CACTCACTTT GTAGACCAGG CTGGCCTCGA ACTCAGAAAT CCGCCTGCTT
  CTGCCTCCCG AGTGCTGGGA TTAAAGGCGT GTGCCTCCAC GCTCGGCTTG AAGCCTGTGT
  TTTATAGAAG GAAAAAAAAT TGAGGTGCAG TGAAATGATT GGCTGTCAGA TACGACGACA
  GGTACTAGAC TGTGAGACCC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147553280	ENSMUSSNP6012638	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52448642					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135623936 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	Intron
Rr377252	regulatory region 377252	1683 bp upstream
Rr602183	regulatory region 602183	1221 bp distal
Rr602184	regulatory region 602184	927 bp distal
Rr602185	regulatory region 602185	55 bp distal
Rr602186	regulatory region 602186	247 bp proximal
Rr602187	regulatory region 602187	370 bp proximal
Rr602188	regulatory region 602188	398 bp proximal
Rr602189	regulatory region 602189	1644 bp proximal
Tssr39650	transcription start site region 39650	1430 bp downstream
Tssr39651	transcription start site region 39651	1229 bp downstream
Tssr39652	transcription start site region 39652	1149 bp downstream
Tssr44006	transcription start site region 44006	1857 bp downstream