rs52445062 SNP Detail

Summary

• ID
  rs52445062
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147511505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGATTCTC CTCCTTCCAC CTTGTGAGAT CCACAGATCA
  AACTCAGATT GCAAGTCCTG TGATTGTTTG CCTCTACTGG CTGAGTTATC TCAAGACTCG
  C
  AAATGATTTT TCTATTTAAG TATTTCTATT AAATTTTTTA TCTTTTAATT AGCCAAAACA
  TTCTCATTCT CTTTCTGTGT CTCTATTCCT CTGTCTGTC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147959126	ENSMUSSNP5747948	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52445062					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147511505 () rs orientation: forward

Symbol	Name	Function Class
Rr398813	regulatory region 398813	813 bp upstream
Rr398814	regulatory region 398814	1722 bp upstream
Rr604485	regulatory region 604485	829 bp distal
Rr604486	regulatory region 604486	915 bp distal