rs52444198 SNP Detail

Summary

• ID
  rs52444198
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129940443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACATAGTGA GAACCTATCT TAAAAATAGA AAGTTCTAGG
  TTTGCTTCTG TCCCAGACCA GCTCAAGGCC AGCCTGAGCA ACAGAGCGGT TTGGGTTTTT
  T
  GTTTGGTTGT TTTTTTTGTT TGTTTATTTG TTTGTTTTTG AGACAGGGTT TCTCTGTGTA
  GCCCTGGCTG TCCTGGAACT CACTTTGTAG AGTAGGCTG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147458148	ENSMUSSNP6566143	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52444198					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129940443 () rs orientation: forward

Symbol	Name	Function Class
Col16a1	collagen, type XVI, alpha 1	1195 bp upstream
Cpgi14918	CpG island 14918	653 bp distal
Cpgi14919	CpG island 14919	673 bp proximal
Gm12963	predicted gene 12963	within coordinates
Rr600419	regulatory region 600419	535 bp distal
Rr600420	regulatory region 600420	989 bp distal
Rr600421	regulatory region 600421	343 bp proximal
Rr600422	regulatory region 600422	1099 bp proximal
Rr600423	regulatory region 600423	1201 bp proximal
Tssr1308	transcription start site region 1308	896 bp upstream
Tssr39217	transcription start site region 39217	710 bp upstream
Tssr39218	transcription start site region 39218	1206 bp upstream
Tssr39219	transcription start site region 39219	1264 bp upstream