rs52442830 SNP Detail

Summary

• ID
  rs52442830
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147511591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TATCTCAAGA CTCGAAAATG ATTTTTCTAT TTAAGTATTT
  CTATTAAATT TTTTATCTTT TAATTAGCCA AAACATTCTC ATTCTCTTTC TGTGTCTCTA
  T
  TCCTCTGTCT GTCTCTGACT GTCTGTCTCT GTCTGTCTGT CTGTCTGTCT CTGTCTCTCT
  CTCTCTCTGT CTCTCTCTCT CGCCTGAATA AGGAGAAAGC A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147959160	ENSMUSSNP3257993	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52442830					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147511591 () rs orientation: forward

Symbol	Name	Function Class
Rr398813	regulatory region 398813	727 bp upstream
Rr398814	regulatory region 398814	1636 bp upstream
Rr604485	regulatory region 604485	915 bp distal
Rr604486	regulatory region 604486	1001 bp distal