rs52441089 SNP Detail

Summary

• ID
  rs52441089
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178304808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCATCTTT CTACTCCTGG ATGATGTCAC ACGATCTTCT
  TCTACTTCTT ACTTACCAGT GTTATCACCA TGATGGGGGT TATTCTTTTA ATTTAATTTT
  W
  AAAAAGGTTT ATTTTTTATT TTATAGGTAT GAGCATTTTT GCATGTCCAG TAATGAAGGC
  TCAAAGATGG AGCTGAATTC CCTGGCATGG GGTTCCTGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148367417	ENSMUSSNP798706	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52441089					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178304808 () rs orientation: forward

Symbol	Name	Function Class
Gm35695	predicted gene, 35695	within coordinates
Rr397573	regulatory region 397573	1968 bp upstream
Rr572447	regulatory region 572447	229 bp distal
Rr572448	regulatory region 572448	1868 bp proximal