rs52438688 SNP Detail

Summary

• ID
  rs52438688
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19620635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTTAAGG TCAAGGCCAG
  CGTGGTCTTC AAAAATAGTT CCGGGACAGC CAGTGCTCCA CAGGGAAACC GTGTCTTGAA
  AAACCTAGAT AGATAGATAG TAGATAGATA GATAGATAGA TAGATAGATA GATAGATAGA
  TAGATAGATA GATATAAACA TAAAAATAAT AAATAAAAGG AGGCAGAAAT GTGTTCAGCA
  K
  GAGGAAGGCA GCTAGAGACA CAACCATGCC ACAATAGAAT GTGGCTGAGG ACATCCCAAA
  AGCTCTCCTC TGACATCTCA ACCCATGGAG GGACAGCTGG GTGAGCCGGT CAGAATCAGC
  CCCAGGTGAC TGAGAGGCTG GGATGGCAGT AGGTGGGTCT CGTCTGAGAG TGTTGGCTAT
  GACATCCTGT TTTTCTCCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60377065	NES15885453	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs52438688					SNP	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60377065	NES15885453	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19620635 () rs orientation: forward

Symbol	Name	Function Class
Dnajc5b	DnaJ heat shock protein family (Hsp40) member C5 beta	Intron
Rr574004	regulatory region 574004	294 bp proximal