rs52437592 SNP Detail

Summary

• ID
  rs52437592
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131110846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTTTTAA TATGTCCTCT
  AAAAACTGAA GAACATATCT TCTGGGTGGG AAGGAACCCT GACACCTATT TTGAAAGGCT
  GCCGACATCA CGTGATTAGC AGATACAGCT TTAGGCTTTT GTAGGTCAGT AACCAAGTAC
  ATACTCTGCT GAACAGGAAC AAAAATTAAT TTTAATTGCC AACCAGGCAT TCCAGTTTAA
  R
  TAAATTCAGG TCAACAAGTC ATATTCTGGA GTGAGAATTT TGGTTTCCAG TTATGTTATG
  TGAATATTTT TGTTGCTGTT GTTGGTTTGG TTTTTTGGTT TTAATCCCAG GTGTGGCACA
  TGGGGCTGCT TAAGATTGTC CACAGCTGTT AACTATGATT TGTCGCCTGC TCTAGGAGAG
  ACATGATTTT TGCCAGCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61081001	NES16597765	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs52437592					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61081001	NES16597765	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131110846 () rs orientation: forward

Symbol	Name	Function Class
4930534D22Rik	RIKEN cDNA 4930534D22 gene	within coordinates
Rr585332	regulatory region 585332	776 bp distal
Rr585333	regulatory region 585333	280 bp proximal
Sgms2	sphingomyelin synthase 2	1788 bp downstream