rs52437400 SNP Detail

Summary

• ID
  rs52437400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148916501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGCTTGGCT TGCAGGACTC CCTGGATATG GTTTTCTTTT
  TCTTTTTCTC TTCCTTTTTC TTTTTCTTTT TCTTTTTCTT TTTTCTTTTT CTGGTGTTTT
  Y
  GAGACAGGGT TTCTCTGTGT AGTCTTGGCT GTCCTGGAAC TCACTCTGTA GACCAGGCTG
  GCCTCAAACT CAGAAATCCG CCTGCCTCTG CCTCCCAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148020551	ENSMUSSNP7053013	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321423194	CHEV_4_148206153	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52437400					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148916501 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Casz1	castor zinc finger 1			Intron
				Noncoding-Transcript-Variant
Rr377397	regulatory region 377397			694 bp downstream
Rr604769	regulatory region 604769			1261 bp distal
Rr604770	regulatory region 604770			1061 bp proximal