rs52431721 SNP Detail

Summary

• ID
  rs52431721
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19620595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGGAAACC GTGTCTTGAA AAACCTAGAT AGATAGATAG
  TAGATAGATA GATAGATAGA TAGATAGATA GATAGATAGA TAGATAGATA GATATAAACA
  W
  AAAAATAATA AATAAAAGGA GGCAGAAATG TGTTCAGCAG GAGGAAGGCA GCTAGAGACA
  CAACCATGCC ACAATAGAAT GTGGCTGAGG ACATCCCAAA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ
ss60377066	NES15885452	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ
rs52431721					SNP	T	T	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60377066	NES15885452	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19620595 () rs orientation: forward

Symbol	Name	Function Class
Dnajc5b	DnaJ heat shock protein family (Hsp40) member C5 beta	Intron
Rr574004	regulatory region 574004	334 bp proximal