rs52428342 SNP Detail

Summary

• ID
  rs52428342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140476650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AACTTGGGTC TTCTGGAAGA ATACTGAGTG CTTTTAACCA
  CTGAGCCATC TTTCCAGTCC CATATATATA TATATATATA TATATATATA TATACACATA
  Y
  ATATACACAC ACACACACAC ACACATATAT ATATATGTAT ATATATTATA TTATATTTAT
  GCACCACAAA TGTGCCTGGT GCCCGAGGAG GTCAGAAGAG G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147711213	ENSMUSSNP5036250	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52428342					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140476650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15196	CpG island 15196	1031 bp proximal
Gm69576	predicted gene, 69576	within coordinates
Padi4	peptidyl arginine deiminase, type IV	Intron
Rr367763	regulatory region 367763	1210 bp upstream
Rr603538	regulatory region 603538	1204 bp distal
Rr603539	regulatory region 603539	1425 bp distal
Rr603540	regulatory region 603540	1205 bp distal
Tssr1360	transcription start site region 1360	1175 bp downstream
Tssr44277	transcription start site region 44277	1207 bp downstream
Tssr44278	transcription start site region 44278	1230 bp downstream
Tssr44279	transcription start site region 44279	1263 bp downstream