rs52426869 SNP Detail

Summary

• ID
  rs52426869
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149955485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT CTTGGAGAGT TTTGCTCTAG
  K
  TGGGGGGAAC ATCCAATACA TTTGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148042089	ENSMUSSNP264684	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
ss321427062	CHEV_4_149245137	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52426869					SNP	G	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149955485 () rs orientation: forward

Symbol	Name	Function Class
Rr377409	regulatory region 377409	1935 bp downstream
Rr605087	regulatory region 605087	1923 bp distal
Rr605088	regulatory region 605088	691 bp distal
Rr605089	regulatory region 605089	395 bp distal
Rr605090	regulatory region 605090	within coordinates