rs52425519 SNP Detail

Summary

• ID
  rs52425519
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143889624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTTCAG ACACATCAGA
  AGAATGCATC GGACCCCATT ACAGATGGTT GTGAGCCACC ATGTGGTCGC TGGGAATTGA
  ACTCAGGACC TCTGGAAGAG CAGTCAGTGC TCTTAACTGC TGAGCCATCT CTCCAGCCCA
  CTTTTAAACT GTGTGTGCGC GCACATGTGT GTGTGTCTGT GTGTCTTTGT GTGTGTGTGT
  C
  TGTCTGTCTG TCTTTCTGCC TGTCTATCGG TGTTTATATG ACATGTGGTG TGTCTGAGTG
  TTTATGTTCC TGTATATGCA TATGCCACGT GCATTGGGTT TCCAGCAGAG GCCGGAAGAC
  AGAGGGGGAG CTGGAGTTGC AAAGGATTGT GGGCTGCCCA GCGTGGATTT GGGGAACAGA
  ACTCAGGTTC TCTGAAAGAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss136029136	ENSMUSSNP6693490	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52425519					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143889624 () rs orientation: forward

Symbol	Name	Function Class
Rr586593	regulatory region 586593	1425 bp distal
Rr586594	regulatory region 586594	1662 bp proximal