rs52416601 SNP Detail

Summary

• ID
  rs52416601
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145096438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTATATATTG TATGTATACA TACATATATA CACACACACA
  TATATATGTA TATGTATATA TATGTGTGTG TATGTGTATA TATATGAAAA TGTATATATG
  K
  GTGTGGAACC ATACTTACCA CAAAGCCACA GCCAGAGTTC CAGCCTTAAC CCTACATGGT
  GGAAGTGAAT AAAGAGCTCA CTCCCCCAAG TTTCCTTCC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61094053	NES16599727	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	T	G	G		T	G	T	T		T
ss321008134	CHEV_3_145053647	CHEVERUD	SCREENING_POP	f	SNP										T					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52416601					SNP	G	G	G	G	G	T	T	G	G	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61094053	NES16599727	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145096438 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Gm35133	predicted gene, 35133			within coordinates
Rr586774	regulatory region 586774			1425 bp proximal
Rr586775	regulatory region 586775			1749 bp proximal