rs52411681 SNP Detail

Summary

• ID
  rs52411681
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:22495439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTATAGTTT ATAAAATTAA ACATATGAAA GTTGGCCAAA
  GTTTAGAAAT CTGATAAATT ACACACACAC ACACACACAC ACACACACAC ACACACACAC
  R
  CGCGCGCGCG CGCGCGTGTA TTAGCAATAA AAGTTCATCT CTCTTTTTAC AGCTTATAGA
  ATTCCTTGTT GAAATAGAGT AACTACCCTC TTGGAAAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133070832	ENSMUSSNP232095	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321765717	CHEV_6_22445440	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52411681					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:22495439 () rs orientation: forward

Symbol	Name	Function Class
Rr379050	regulatory region 379050	481 bp downstream
Rr627113	regulatory region 627113	1175 bp distal
Rr627114	regulatory region 627114	1310 bp distal
Rr627115	regulatory region 627115	1219 bp proximal
Rr627116	regulatory region 627116	1858 bp proximal