rs52410694 SNP Detail

Summary

• ID
  rs52410694
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:32951754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTATATG AATGCCATTC
  TACTCAAGAA AAATCTCATG GGGTTGGCTG CTCAGGACTT AGTGGGTAAA GTGCGCTCTG
  ATGAAGCATG AGAACCCAAA TTCAAATCCC TCAGCACCGA TATACATATA AATGCAAGCA
  AGAAAGTTAA CACACATACA TGCACACATG CAGGCATGCA TGCGCGCGCA TGTGCATGCT
  Y
  TCTCTCTCTC TCTCACGCAC GCGCACACGC ACACGCGCAC ACGCACACAC ACACACACAC
  GATCTGATGA CAAATGAGTG ATGGAACCTT TTGCTCACAG AGGTGGAGAG GTCAGCAGGT
  AGAACGGTGA ACATGACGCT TCGATCTTAC CTGAGGCTGG TGATAAATTT ACGGTGAAGC
  GATTTTTTTT TTTCACACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146163675	ENSMUSSNP2566954	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321072565	CHEV_4_33038729	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52410694					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:32951754 () rs orientation: forward

Symbol	Name	Function Class
Ankrd6	ankyrin repeat domain 6	913 bp upstream
Rr590062	regulatory region 590062	939 bp distal
Rr590063	regulatory region 590063	1246 bp distal
Rr590064	regulatory region 590064	423 bp distal
Rr590065	regulatory region 590065	803 bp distal
Tssr41164	transcription start site region 41164	888 bp upstream