rs52409790 SNP Detail

Summary

• ID
  rs52409790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150544415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CAATTGTCAT GACTCTGGGG CTTTTGAAGG CTACTCTTTT
  TTCTCAGTTT TCTGTGCATG TTGCTGCCTC CTCCTCCTCC TCTTCCTCCT CTTCCTCCTC
  Y
  TCCTCCTCCT CCTCCTCCTC CTCCTCCTCC TCCGTCTCAC TTTGTCTTTC CAGTGTGGTC
  TTGTCTTTCC TTTGACCACT CACTGCGTCC CCTGGGCCTG T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148053534	ENSMUSSNP2288460	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52409790					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150544415 () rs orientation: forward

Symbol	Name	Function Class
Gm52709	predicted gene, 52709	within coordinates
Gm68777	predicted gene, 68777	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr605305	regulatory region 605305	159 bp distal
Rr605306	regulatory region 605306	1152 bp proximal
Rr605307	regulatory region 605307	1502 bp proximal
Rr605308	regulatory region 605308	1965 bp proximal