rs52406175 SNP Detail

Summary

• ID
  rs52406175
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119833525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTTTTCTT TTTGAGACAC TCCCATGCCC AAAAATTTAG
  CCAAAGGACC AAGCTGAGGT ATAAGATTAG TGCATAAACC CACATTGCAA TAATATATTG
  A
  CTTAAATTGG GATGGTTTGG GGATTTGTTT GTTTATTTGG TCTTTGGGAT TTTTTTTTTC
  TCTGCTTTTG AGGTTTTTGT TGTTGTTACT TTTTGTTTG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133593647	ENSMUSSNP3977464	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52406175					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119833525 () rs orientation: forward

Symbol	Name	Function Class
Rr380000	regulatory region 380000	1412 bp downstream
Rr637739	regulatory region 637739	1960 bp distal
Rr637740	regulatory region 637740	747 bp distal