rs52402227 SNP Detail

Summary

• ID
  rs52402227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:15640703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGACACG GGAAGGCACT
  CATTCATGGC TGCTGCCTTA TTGTCTAGCA TTTCAAAGCT CAAAGCTCAA AGCTCAGTTT
  GCAAAGTTGT GAGAGAAAGG GCTGCTTGCA GGCTATTTAT TTATGCATTT ATTTATTTAT
  TTACTTATTT ATTTACTTAT TTAATTATTT TGGTCCTGAT TTTTCCTTTT TAGAGAGTCC
  R
  GTTTTTCTTG TTCTTTTTGC TTGTCACACT CACACTTGAA CACAACAGTT CGCATATCAT
  TGTTACATCT ATTTTTTTTT TAAATTCATT GTACAAGAAA CACATTGTTG AGAATGTGCT
  GCACATTTAT TTCAGAATGA CTGGGAAGAA TGAATCACTT GTCTTAGAAT TTATTGCATT
  CATTTATTGT AGCATTTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60865394	NES15989565	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52402227					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60865394	NES15989565	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15640703 () rs orientation: forward

Symbol	Name	Function Class
Gm36352	predicted gene, 36352	947 bp upstream
Rr626670	regulatory region 626670	1483 bp distal
Rr626671	regulatory region 626671	374 bp distal