rs52401452 SNP Detail

Summary

• ID
  rs52401452
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147514805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGTGCCACA CACCTCTAAT GTCCATCTTT AAGAAGTAGA
  GGCAGAAACA TCAGGTTATT CATTGGCAGC CTGAGCCAAA GACAATCTCA AAATAAATGA
  T
  TAAATTAGTT AATCAATAAA AACTAAAATA AATAAATTAT AAATATGGTT AATCTAAGTT
  CTCAGTGTCC TACACTAGTA TAGCATATGC TACCATTCC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147959720	ENSMUSSNP2654770	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321414631	CHEV_4_146804457	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52401452					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147514805 () rs orientation: forward

Symbol	Name	Function Class
Rr398814	regulatory region 398814	1278 bp downstream
Rr398815	regulatory region 398815	837 bp downstream
Rr398816	regulatory region 398816	within coordinates
Rr398817	regulatory region 398817	641 bp upstream
Rr604487	regulatory region 604487	1807 bp proximal