rs52401154 SNP Detail

Summary

• ID
  rs52401154
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136858227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGC TCTTTTGTTG CTATTTTCTT
  G
  CTTGTTTAAT TTTCTTTTCT CAATA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135938738	ENSMUSSNP2589038	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320975045	CHEV_3_136815430	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52401154					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136858227 () rs orientation: forward

Symbol	Name	Function Class
Rr375787	regulatory region 375787	257 bp upstream
Rr585922	regulatory region 585922	1475 bp distal
Rr585923	regulatory region 585923	845 bp proximal
Rr585924	regulatory region 585924	1811 bp proximal