rs52400625 SNP Detail

Summary

• ID
  rs52400625
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152055260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCGGGGC CTGTGCATGC
  TAGGCAAGCA CCTGTAACCC CCTAGCTGAT TCTTTGCTTT TTATTCTGAA ACTAGCCTCA
  CTGTGGTATC TTTACCTCCA GAGGGCAGAG GGCAGAGGGC AGAGGGCAGG GGCAGAGGGC
  AGGGGCAGAG GGCAGAGGGC AGAGGGCAGG GGCAGAGCAG CAGATCGTGA ACTCACTTTG
  W
  AGCCTTGAAT TTGTTACTTT TTTTCCTTTC CTTTTTTTTT TTTTTTTTTT CTTTTTGGTT
  ATTTTGATGG AGTCTCATAA AGGCAAGGCA GAAACTTGCT GTGTAGCCCA GGCTAGCCTG
  GAACTTGCTG TGTAGCCCAG GCTAGCCTGG AACTTGTGAT CCTTCTCTCT CCACTTCTGA
  ATAGCTGGGA TTATTGGCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136102644	ENSMUSSNP5503549	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss321028730	CHEV_3_152012587	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52400625					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152055260 () rs orientation: forward

Symbol	Name	Function Class
Rr587535	regulatory region 587535	1962 bp distal
Rr587536	regulatory region 587536	985 bp proximal
Tssr32407	transcription start site region 32407	1049 bp downstream
Tssr32408	transcription start site region 32408	381 bp upstream
Usp33	ubiquitin specific peptidase 33	Intron