rs52392446 SNP Detail

Summary

• ID
  rs52392446
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:97979495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TGTGTGTGTG TGTGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAAATAG AGAGGGGGGT TAGAATTATC ATCTCTTTCA
  T
  CTGCAGTTTG AGGTCCGGGA AGTGGACAGG GCTGTCCCCT GATGGAGGAC ACATCTCTCT
  GGGTTATTGT GGACTGAGAA AGCTGTCTGT ATAGAGGGCA T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147085128	ENSMUSSNP1777482	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52392446					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:97979495 () rs orientation: forward

Symbol	Name	Function Class
Nfia	nuclear factor I/A	Intron
Rr367651	regulatory region 367651	140 bp upstream
Rr595683	regulatory region 595683	866 bp distal
Rr595684	regulatory region 595684	within coordinates
Rr595685	regulatory region 595685	129 bp proximal