rs52391887 SNP Detail

Summary

• ID
  rs52391887
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95843135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATA AATCTTTAAA AAAAAAAAAA
  R
  GAAAAACAAA ACCCAAAAAC AAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss135513140	ENSMUSSNP7220074	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320841236	CHEV_3_95739746	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs52391887					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95843135 () rs orientation: forward

Symbol	Name	Function Class
Anp32e	acidic nuclear phosphoprotein 32 family member E	Intron
Rr581091	regulatory region 581091	200 bp proximal
Tssr30659	transcription start site region 30659	1801 bp downstream
Tssr30660	transcription start site region 30660	987 bp downstream
Tssr30661	transcription start site region 30661	1320 bp upstream