rs52389901 SNP Detail

Summary

• ID
  rs52389901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144680327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TTATTAACAA AGGAAACCAG AGGACATGAA GGGGCAATGG
  AGACATGTTA GATAGATAGA TAGATAGATA GATAGATAGA TAGATAGATA GATAGATAGA
  Y
  AGATAGATAG ATAGATAGAT AGTCAAAGAA TGAACAAAAG TATTCTATTC AATGGAAGAA
  GATGCATCTA ATCCTCGAGA GACTTGAGGC CCCAGGGAGG G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147841591	ENSMUSSNP5048367	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52389901					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144680327 () rs orientation: forward

Symbol	Name	Function Class
Gm42344	predicted gene, 42344	within coordinates
Gm69556	predicted gene, 69556	within coordinates
Rr604272	regulatory region 604272	1562 bp distal
Rr604273	regulatory region 604273	103 bp distal
Rr604274	regulatory region 604274	1924 bp proximal