rs52389417 SNP Detail

Summary

• ID
  rs52389417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:95415884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATAACCAGG TTACTAATAC TAATACATAT TCACGACATA
  ATTTTTTAGT TTAGAGGTTT TATTTATTCA CTTATTTAGT TAGTTAGTTT GAGAATTTCA
  Y
  TCATAAGTAT TGGATTTACA TAATTTCCAC CCTTCTTTTG CTCACATCAG TTCCTCCCAT
  GACCTTTCTC ACATACATCA CAGCAAGTTC ATGATCCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146965729	ENSMUSSNP2544868	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320401579	CHEV_2_95425696	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52389417					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:95415884 () rs orientation: forward

Symbol	Name	Function Class
Rr561415	regulatory region 561415	1496 bp proximal