rs52389251 SNP Detail

Summary

• ID
  rs52389251
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:158110942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCAGCTAA AGGTAAGGCT TCCACAGAGA CACGTACCTG
  CTCACGTGTG CACTCTGTAA TCCCAGAAAC GGACTTCTTC CTGCTTGTTT TACCCCACTC
  M
  ACACTCCCCT GCATCCCCAC CCCAGCCCTG CTGCCCCACC CCCAAGATCC CAAAGACTCA
  CTGCGCCTGC CCATCACCCA GGGCCTTTGC ACTGCCTTT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148112633	ENSMUSSNP451936	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss320588356	CHEV_2_158094758	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52389251					SNP	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158110942 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	Intron
Rr568716	regulatory region 568716	1437 bp proximal