rs52386900 SNP Detail

Summary

• ID
  rs52386900
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146888884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATAAAATGT ATTAATTGAT GCTGTCCAAG ATCTTGTCAT
  CAGTTTTGTT CAACGTAGCC ACCTTGTATT CTCTCTGTCT CTGTCTCTGT CTCTCTCTCT
  C
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCCACACA CACACACACA CACACACACA
  CACACACACA CACACACACT CACAGTCAAG AGATCCTGA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss136048040	ENSMUSSNP2124791	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52386900					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146888884 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13926	CpG island 13926	474 bp distal
Gm65492	predicted gene, 65492	within coordinates
Rr375882	regulatory region 375882	548 bp downstream
Rr587132	regulatory region 587132	1849 bp distal
Rr587133	regulatory region 587133	1348 bp distal
Rr587134	regulatory region 587134	513 bp distal
Rr587135	regulatory region 587135	81 bp distal
Rr587136	regulatory region 587136	386 bp proximal