rs52385135 SNP Detail

Summary

• ID
  rs52385135
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135906021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCCTCTA CCTACTGGCC
  TTCATGGCTT TCTCCTCTAA AGCTTAAGGG TGTGTAAACG CTGTTACTCA AGGATTAGTT
  CCCTCAACTA TCTACTCCAA AATAATACCC ACCTGAAATT TTCTTAAGTG CCCCTCTATA
  TGAGGTGGTG GAGACTTACT TCATCCTGGC CTTAAACGCT AGTTCTCATC AGATACATCA
  Y
  ATGAAATATT ATGTCCTTGT TTTGTTTTTC CATTCTGTGC TGGATAGGTT TGTTTTTTGG
  GTTTTTTTTT GTTTTGTTTT TTTGTTTTTT TTGTTTTTTT GTTTTGTTTT GTTTTTTGTT
  TTTTGTTTGT TTGTTTGTTT GTTTGTTTTT GTCAACTTGA CACAAACTAA AGTCATCTGA
  CAGGAGAAAA CCTCAATTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61085142	NES16592816	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs52385135					SNP	T	T	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61085142	NES16592816	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135906021 () rs orientation: forward

Symbol	Name	Function Class
Bank1	B cell scaffold protein with ankyrin repeats 1	Intron
Gm66328	predicted gene, 66328	within coordinates
Rr585811	regulatory region 585811	708 bp distal