rs52381639 SNP Detail

Summary

• ID
  rs52381639
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:117225789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATT AAAATAAAAA TATCTGTTCA
  S
  CCTTTCATGG ACACTTAAGC TGGCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135690059	ENSMUSSNP2756407	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss320899426	CHEV_3_117135058	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52381639					SNP	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117225789 () rs orientation: forward

Symbol	Name	Function Class
D3Mit299	DNA segment, Chr 3, Massachusetts Institute of Technology 299	within coordinates
D3Mit299.1	DNA segment, Chr 3, Massachusetts Institute of Technology 299.1	108 bp distal
Gm66094	predicted gene, 66094	375 bp downstream