rs52379638 SNP Detail

Summary

• ID
  rs52379638
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136008962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CAGGCCAACC CCTGGGCCTT GCTTGTGGGA CTTACCACCA
  GCTTCACTGA TCTGCAGGCA GAGGCAGAGA CAGACAGACA GACAACAGAC AGACAGACAG
  R
  CAGGCAGGCA GGCATGCAAG GGAACATGAG ACAGACGCTG TCCTTGCCCT GCTTCCTCCC
  CTGCCACTCT TCCCTCCTGT CCTCAGAAAC CCAAGCCCTG C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147564474	ENSMUSSNP3228220	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52379638					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136008962 () rs orientation: forward

Symbol	Name	Function Class
Rr602339	regulatory region 602339	916 bp proximal
Rr602340	regulatory region 602340	1973 bp proximal