rs52378663 SNP Detail

Summary

• ID
  rs52378663
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106717849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC ACACACACAC ACACACACAC
  A
  CACATTCACA CGCACATGCA CATGC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147172915	ENSMUSSNP3620660	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52378663					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106717849 () rs orientation: forward

Symbol	Name	Function Class
Gm69305	predicted gene, 69305	831 bp upstream
Gm69780	predicted gene, 69780	1040 bp upstream
Gm70282	predicted gene, 70282	within coordinates
Rr376973	regulatory region 376973	137 bp downstream
Rr596849	regulatory region 596849	801 bp distal
Rr596850	regulatory region 596850	456 bp distal
Rr596851	regulatory region 596851	1729 bp proximal
Tssr38192	transcription start site region 38192	897 bp downstream
Tssr42651	transcription start site region 42651	1263 bp upstream
Tssr42652	transcription start site region 42652	1056 bp upstream
Tssr42653	transcription start site region 42653	1032 bp upstream