rs52376689 SNP Detail

Summary

• ID
  rs52376689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:28020607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctgcatgca tatgatgcac agacatacat
  gcacacaaac attatatatg agacaaTCAC AACCATAGAA CCACATACCC TCTACTGGCC
  TCCACAGCCC TGGCACTGTG TGCACACATC AACAAGGaca cacgcacatg tacatacata
  Y
  acacacacac acacacacac acacacacac acggaccata aagatggctt agcaagtgcc
  agcatctgtt ccaaccacgg cggcctgagt acaaggtggg agaggagagg caggctgtcc
  tctgactcca cataacagcc ttgatacacg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145419503	ENSMUSSNP6741545	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss325349713	CHEV_17_27938578	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52376689					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28020607 () rs orientation: forward

Symbol	Name	Function Class
Ilrun	inflammation and lipid regulator with UBA-like and NBR1-like domains	Intron
Rr392473	regulatory region 392473	408 bp downstream
Rr524311	regulatory region 524311	1074 bp distal
Rr524312	regulatory region 524312	157 bp distal
Rr524313	regulatory region 524313	58 bp distal