rs52375930 SNP Detail

Summary

• ID
  rs52375930
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30911513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAC ACGGCACACG TGTATGTTAA
  R
  TAGATTGAGT GGATGCTGGC TCAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320694182	CHEV_3_30756286	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52375930					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30911513 () rs orientation: forward

Symbol	Name	Function Class
Gm42199	predicted gene, 42199	995 bp upstream
Gpr160	G protein-coupled receptor 160	Intron
Rr574831	regulatory region 574831	1454 bp distal
Rr574832	regulatory region 574832	1339 bp distal
Rr574833	regulatory region 574833	1007 bp distal
Rr574834	regulatory region 574834	707 bp distal
Tssr28695	transcription start site region 28695	1606 bp downstream
Tssr28696	transcription start site region 28696	1362 bp downstream
Tssr28697	transcription start site region 28697	1357 bp downstream
Tssr28698	transcription start site region 28698	1338 bp downstream