rs52375422 SNP Detail

Summary

• ID
  rs52375422
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153648256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG TTCAAGTGCA GTTTTTGGTG
  S
  TGCTGTTTGT TTTGTTTTTG AGACA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136115262	ENSMUSSNP4596505	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss321031889	CHEV_3_153605583	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52375422					SNP	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153648256 () rs orientation: forward

Symbol	Name	Function Class
Acadm	acyl-Coenzyme A dehydrogenase, medium chain	Intron
Cpgi13964	CpG island 13964	1361 bp proximal
D3Mit88	DNA segment, Chr 3, Massachusetts Institute of Technology 88	1511 bp distal
Rr587801	regulatory region 587801	348 bp proximal
Tssr36252	transcription start site region 36252	1806 bp downstream
Tssr36253	transcription start site region 36253	1842 bp downstream