rs52374139 SNP Detail

Summary

• ID
  rs52374139
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123028912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATC CAGAAATTGG GGAAGGAGGG
  K
  ACATAGGCAG AGTTGGAGGA AGGAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	MSM/Ms	SM/J
ss135760878	ENSMUSSNP7094272	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320918234	CHEV_3_122938181	CHEVERUD	SCREENING_POP	f	SNP	T		G
SNP Consensus Information
SNP					Consensus Type	LG/J	MSM/Ms	SM/J
rs52374139					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123028912 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13775	CpG island 13775			729 bp proximal
Rr584473	regulatory region 584473			392 bp distal
Rr584474	regulatory region 584474			564 bp distal
Rr584475	regulatory region 584475			823 bp proximal
Rr584476	regulatory region 584476			1657 bp proximal
Synpo2	synaptopodin 2			Intron
				Noncoding-Transcript-Variant
Tssr35497	transcription start site region 35497			848 bp downstream
Tssr35498	transcription start site region 35498			871 bp downstream