rs52373230 SNP Detail

Summary

• ID
  rs52373230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148023924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACTGTGTA GACAGGCTAG CCTTGAACTT AGTAAAATCT
  ACCTGCCCCT GCCTCTTGAA GAGTCAGATT AAAGATATGT GTACAACAAC TGGCTAAAAT
  R
  TGCTACTGAG CTCTGGGGTG TTTGTTTGCT TGCTTGCTTG CTTTAGTTTT TCTTTTTCTT
  TCTTTTTTTT TACACTGTAG CTGTCTTCAG ACATTCCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147987484	ENSMUSSNP5100132	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52373230					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148023924 () rs orientation: forward

Symbol	Name	Function Class
2510039O18Rik	RIKEN cDNA 2510039O18 gene	mRNA-UTR
Cpgi15285	CpG island 15285	1180 bp proximal
Rr377387	regulatory region 377387	1453 bp downstream
Rr398852	regulatory region 398852	1239 bp upstream
Rr604527	regulatory region 604527	1645 bp distal
Rr604528	regulatory region 604528	378 bp distal
Rr604529	regulatory region 604529	938 bp proximal
Rr604530	regulatory region 604530	1385 bp proximal
Tssr40235	transcription start site region 40235	1392 bp upstream
Tssr40236	transcription start site region 40236	1459 bp upstream