rs52372185 SNP Detail

Summary

• ID
  rs52372185
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151766893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATGATTT ATGAAATTCT
  GCTGGTAACA TCAGCTCCAA GAGATGTGGC GCCCCCTTTT GGCCTCAACC AGCACCTGCA
  CACATGTGCA CACCTACATA CAGACACCCC CTTATATGCA TACATACACA GGCTTAGCAC
  AGCCCTGTTA TATACAAATG CACACACACA TAGGCTTAGC ACAGCCCTGT TTCACACATA
  Y
  ACACACACAG GGTTAGTGCA GCCCTGTTGT AACACACACA CACACACACA CACACACACA
  CACCTCATAC ATACTTACTT CAAAAGGAAA ATGTCAAGAA TAGGGAAGGC AGCAAAGATT
  TTGCTTTCTG CCTAGATCAG AAACTATGTA TGTGGCTGAG TGTTCGGTCC TGGTTATTTC
  ACCTCAAAGT GACTCCATCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148075604	ENSMUSSNP1630271	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52372185					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151766893 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camta1	calmodulin binding transcription activator 1			Intron
				Noncoding-Transcript-Variant
Gm38442	predicted gene, 38442			within coordinates
Rr605620	regulatory region 605620			134 bp distal
Rr605621	regulatory region 605621			854 bp proximal