rs52372149 SNP Detail

Summary

• ID
  rs52372149
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:10974171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AAGAGAATGA ACTCTGATAG GTTGTCACAA TGTGACCTCC
  ATATACGTGC TTATGCACTA CACGCACACA TACACACACG CACGCGCGCG CACACACATA
  A
  ATAAATAAAT AAATAAATAA ATAAATAAAT AAATAAATAA ATAAATAAAT GTGAAGAAAA
  AATTCAATGT CAAAGACACA CTCTGGCTTC AATCTCCTGG C                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss146010100	ENSMUSSNP6695053	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs52372149					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:10974171 () rs orientation: forward

Symbol	Name	Function Class
Gm69307	predicted gene, 69307	within coordinates
Rr588838	regulatory region 588838	430 bp distal
Rr588839	regulatory region 588839	329 bp distal
Rr588840	regulatory region 588840	within coordinates
Rr588841	regulatory region 588841	1233 bp proximal
Rr588842	regulatory region 588842	1991 bp proximal