rs52369177 SNP Detail

Summary

• ID
  rs52369177
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58977040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAAGAAA AATGTGGTTT
  TTAAACATTT CATTTAGAAC TTTTACCATA ATATGCAGGT AGTAAATGAG TTTTAGAAGT
  ATCTCAAATG GTAAAACAAA CAAACAGCCC CATGGTTCTT CTGTGAAGTA GCTTTTTTAG
  TTTTTAAATT ATTAGAAATA ACTGTTGCAA ACCCTGGCTC TGTACTGAAC TGCTTCAGCT
  Y
  AGCTCTGCAC AGTTACCGTT TTTTGTTGTT GTTATTGTTT TTTTTTTTGT TTTGTTTTTT
  TGTTTTTTTT ACTTAGCTGA TGATGGATTG TGCATCTCAG AAATGTGTTT TCTCAGAATG
  CTAGAGCTTT TAGAAAGATT ATTTACTATA GTAACAATAT TTATTAAACC TTGCATGTGT
  ATGTGTGTGT GGGTATGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60415493	NES15911061	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52369177					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415493	NES15911061	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58977040 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Med12l	mediator complex subunit 12-like			Intron
				Noncoding-Transcript-Variant
Rr577305	regulatory region 577305			299 bp distal