rs52366783 SNP Detail

Summary

• ID
  rs52366783
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:99003532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCAACACA CATCAAACCT TGAAGTGGAA TCTCAAGCTG
  ATTCTGCTCG AGAACTCTGG TATTAACAGG CGACTTTATA ACACTTCACC GCATACACCT
  M
  CTATGACTCT CTCTCTCTCT CTCTGTGTAT GTATGTGTAT ATATATATAT ATAAATATGT
  ATATATATAT ATATATATAT ATATATATAT ATATGTGTG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133426127	ENSMUSSNP678519	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52366783					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99003532 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17779	CpG island 17779			1094 bp proximal
Foxp1	forkhead box P1			Intron
				Noncoding-Transcript-Variant
Rr399785	regulatory region 399785			205 bp upstream
Rr635322	regulatory region 635322			1396 bp distal
Rr635323	regulatory region 635323			within coordinates
Rr635324	regulatory region 635324			173 bp proximal
Rr635325	regulatory region 635325			1677 bp proximal
Tssr62263	transcription start site region 62263			1356 bp upstream
Tssr62264	transcription start site region 62264			1624 bp downstream
Tssr62265	transcription start site region 62265			1680 bp downstream
Tssr62266	transcription start site region 62266			1863 bp downstream