rs52363638 SNP Detail

Summary

• ID
  rs52363638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140258939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTGATTTT AAACTCTGAG ACTCACAGAG TGAGTAGAGA
  ACTGACTGCA TGGAAGTATT CTCTGACCTC CACACACACA CTGTGGCGCA TGCCCCTGGC
  Y
  TGGTAATGAT AATAAAATTT AAAAAGAAGA ATGGGGGAAG AGGAGGAAGA GGAGGCAATG
  GAGGGGGGAG GGAAAGGAAG AAGAGGAAGA GAAAGAAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147703081	ENSMUSSNP6918633	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52363638					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140258939 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arhgef10l	Rho guanine nucleotide exchange factor 10-like			Intron
				Noncoding-Transcript-Variant
Rr603456	regulatory region 603456			193 bp distal
Rr603457	regulatory region 603457			598 bp proximal
Rr603458	regulatory region 603458			1911 bp proximal