rs52359905 SNP Detail

Summary

• ID
  rs52359905
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149088757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCATGCC TGTGTGCGTA
  CCTACTGGCG TGCGTGTGGG TGCACTTGAC AAGTATGGAG GTCAGTTCTC CTTCCACCAT
  CAAGTGCATT CAGGGATCAG CCTCAGATCC CGAGGCTTGG TGGTCCTGAT GCTGCTGCAC
  CACCCTGCCA CCCAGGCATC CACACCAACG GTGCCTGTTC TCCAACATCA CAGAAGCAAG
  S
  AGCTACTCCA CCATCATCAT CACCACCACC ACCATCATCA CCATCACCAT CATCATCATC
  ACCCACTCGT CACCACCCTC TTCCTCCTCT TCTTTTGAGA AAGGGTCTTG TATAAACAGG
  CCTGTTTAAA CATGGGGCTG GAGCCTGGAC CTAAGCCTTC CCAAGCACTA GACAAGCACC
  CTACCAACTG AGCTACCTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148024913	ENSMUSSNP167335	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321424174	CHEV_4_148378409	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52359905					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149088757 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42351	predicted gene, 42351			within coordinates
Pex14	peroxisomal biogenesis factor 14			Intron
				Noncoding-Transcript-Variant
Rr604816	regulatory region 604816			1268 bp distal