rs52358252 SNP Detail

Summary

• ID
  rs52358252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129998251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTACATA GCAAGTTCTA
  AGCCAGTCTG GGCTATGCGG GACCCTAATT GAAGAACCAA GAAAAGGCCA AATCACCTTC
  TTACCTCATC CTCCCAAGGG CTGGAGGATG AGGCTTTTTT AAATAAATAA ATATAAATAT
  ATATATATAT ATATATATTT TTTCAGGAAT GGGTTTTTTT TGTACAGCCT TGGCTGTCCT
  R
  AAAGTAGCTC TTTAGACCAG GCTGGCCTCC AACTCACAGA GATCTGCCTG CCTCTGCCTC
  CCAAGTGCTG GGATTAAAGG TGTGCACTAC CACTGCCTGG CTGGCATCAG GCTCTTACAA
  TGTCCTGTTC TAGACCATGA GAGTGGCACC TAGAAACCTC TAATCATTGT TTAAGCTTGA
  AGAGACCAGC TAACTCCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147459917	ENSMUSSNP5553566	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss321317089	CHEV_4_129781702	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52358252					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129998251 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	997 bp downstream
Rr600439	regulatory region 600439	1890 bp distal
Rr600440	regulatory region 600440	1391 bp distal
Rr600441	regulatory region 600441	617 bp distal
Rr600442	regulatory region 600442	44 bp proximal
Tssr39229	transcription start site region 39229	428 bp upstream