rs52353785 SNP Detail

Summary

• ID
  rs52353785
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138909171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATATACATG CATACATATA TACATACATA TGGACATACA
  TGCATACATA TATACATACA TGTGGACATA CATGCATACA TACATACATA TGTACATACA
  K
  ACAGACAGAC ATCTGAACTA TTTTAGTAAC TTGACAAGAC CATTCATCAT AATTAAATGT
  CTGGCAAAAG CAATTAAGGG GAGGACTTTG GGGTACAAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147667451	ENSMUSSNP6404012	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
ss321380131	CHEV_4_138737775	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52353785					SNP	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138909171 () rs orientation: forward

Symbol	Name	Function Class
Gm16287	predicted gene 16287	1205 bp upstream
Rr603128	regulatory region 603128	1217 bp distal
Rr603129	regulatory region 603129	1069 bp proximal
Rr603130	regulatory region 603130	1788 bp proximal